Abramova A, Karkman A, Bengtsson-Palme J. Metagenomic assemblies tend to break around antibiotic resistance genes. BMC Genomics. 2024;25: 959. doi:10.1186/s12864-024-10876-0
 
@Philip I seem to recall a paper from DTU on a tool that tried to solve precisely the issue your eastern neighbours stumble over in this paper?

Cheers
Marco